Deep Learning / sites

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deepRAM 🌿
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End-to-end deep learning toolkit for predicting protein binding sites and motifs.

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MusiteDeep 🌿
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MusiteDeep provides a deep-learning method for general and kinase-specific phosphorylation site prediction. It is implemented by deep learning library Keras and Theano backend (the Keras2.0 and Tensorflow backend implementation were also provided under folder MusiteDeep_Keras2.0). At present, MusiteDeep only provides prediction of human phosphorylation sites; however, it also provides customized model training that enables users to train other PTM prediction models by using their own training data sets based on either CPU or GPU.

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List of resources related to topics of AI/ML and Deep Learning specifically

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A collaborative list of interactive Machine Learning, Deep Learning and Statistics websites

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A curated list of awesome deep learning applications in the field of computational biology

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"Deep Learning with TensorFlow" LiveLessons

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netron 🌿
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Visualizer for neural network, deep learning and machine learning models

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Detecting Potential Mosquito Breeding Sites using Deep Learning

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A list of deep learning implementations in biology

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Washington University (in St. Louis) Course T81-558: Applications of Deep Neural Networks

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